If scripts are run on an image before capture, they are run on the temp VM that is created during the capture process. Those logs disappear because they are stored on that temp VM that was destroyed at the end of the process which means we can't access them to troubleshoot issues during script runs. I suggest storing these logs in Azure storage, in one of the NMW log blobs so we can retrieve them at any point.
Store script logs separate from VMs
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